PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA96G00058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 24612.7 Da PI: 5.3491 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.3 | 1.1e-37 | 20 | 117 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rr+Ca dC+lapyfpaeqpk f+nvh+lFG+++++k l++l+++++++am+s+++e+ +r r Pv+G++g+i++lq l ++++e + ++ AA96G00058 20 ACAACKYQRRRCAIDCPLAPYFPAEQPKLFQNVHRLFGVKRIIKKLEKLDDSQKPEAMKSIIFESYVRERSPVHGCLGMIQNLQYMLWTAEEEYKFIN 117 7*****************************************************************************************99987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.802 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-34 | 20 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MFIFTILLIF MTLKGSNNGA CAACKYQRRR CAIDCPLAPY FPAEQPKLFQ NVHRLFGVKR 60 IIKKLEKLDD SQKPEAMKSI IFESYVRERS PVHGCLGMIQ NLQYMLWTAE EEYKFINLQL 120 QRYRPLPQQQ QRNQDTSQLD LELNNDCSMD TNTVNTHDTD WRISSYNVFD DNEDIKTIPS 180 LHHEKTREDE DENDNVHYFN NSYDEDTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 16 | 123 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 16 | 123 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA96G00058 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292170.1 | 3e-67 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 2e-66 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | R0HMD7 | 7e-66 | R0HMD7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.13768s0012.1.p | 3e-67 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-65 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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