PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA92G00007

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 411aa MW: 46148.1 Da PI: 6.9415

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA92G00007	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.3e-11	120	148	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le AA92G00007 120 KTLRRLAQNREAARKSRLRKKAYVQQLES 148 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-9	110	164	No hit	No description
SMART	SM00338	1.8E-8	116	198	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	118	162	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-8	120	150	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.3E-7	120	161	No hit	No description
CDD	cd14708	1.76E-23	120	172	No hit	No description
PROSITE pattern	PS00036	0	123	138	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.2E-30	207	281	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MQGHHQNHHQ HISSSSTSAT TSHGNFMNKD VGGSYDLGDI DPSLFLYLDG QGHQDPAPSH 60 VPHHHTIQNL AMRPPTSTLN IFPSQPMHVD LPPSTTSMKE VNRKGPSPSD HDTPKSSDPK 120 TLRRLAQNRE AARKSRLRKK AYVQQLESCR IKLTQLEQEI QRARSQGVFF GGDQHGGVGI 180 GPGNISNEAA MFDMEYGRWL EEQQRLLEEL RVAAQEHLPE NELRMYVDTC LAHYDHLINL 240 KAMVAKTDVF HLISGAWKTP AERCFLWMAG FRPSDIIKVI VNQIEPLTEQ QIVGICALQQ 300 STQEAEDALS QGLESLNQSL SDTILSDTLT LSPLPPHLSN FMSHMSLALN KLSSLEGFVL 360 QADNLRHQTL HRLNQLLTTR QEARCLLAVA EYFHRLQALS SLWLARPRQD G

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MQGHHQNHHQ HISSSSTSAT TSHGNFMNKD VGGSYDLGDI DPSLFLYLDG QGHQDPAPSH  60
VPHHHTIQNL AMRPPTSTLN IFPSQPMHVD LPPSTTSMKE VNRKGPSPSD HDTPKSSDPK  120
TLRRLAQNRE AARKSRLRKK AYVQQLESCR IKLTQLEQEI QRARSQGVFF GGDQHGGVGI  180
GPGNISNEAA MFDMEYGRWL EEQQRLLEEL RVAAQEHLPE NELRMYVDTC LAHYDHLINL  240
KAMVAKTDVF HLISGAWKTP AERCFLWMAG FRPSDIIKVI VNQIEPLTEQ QIVGICALQQ  300
STQEAEDALS QGLESLNQSL SDTILSDTLT LSPLPPHLSN FMSHMSLALN KLSSLEGFVL  360
QADNLRHQTL HRLNQLLTTR QEARCLLAVA EYFHRLQALS SLWLARPRQD G

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA92G00007

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399160.2	0.0	transcription factor TGA10
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	XP_006290099.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.1	0.0	bZIP family protein

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]