PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA90G00080
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 681aa    MW: 77887.6 Da    PI: 5.0701
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA90G00080genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.25e-1093026782373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++lL+ cA+ +s gd+  a+ lL ++++++sp gd+ qRla++f++AL++rl + +++ + +   + ++++++ s+ l+++k+f  +sP++++ ++  N
  AA90G00080 302 RTLLTLCAQSISGGDKISADDLLRQIRKQCSPLGDSAQRLAHFFANALETRLEGsTGPMIQSYYDSITSKKRTASQILKSYKVFLSASPFMTLIYFFSN 400
                 6799**************************************************4455555555777888888************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++Il+a++ ++ +HiiDf+i +G+QWp ++q +++R+++p +lRiTg++ p++g   +e++e tg+rL++++++++vpfe+n++++k++e++++e+L++
  AA90G00080 401 KMILDAAKDASVLHIIDFGILYGFQWPMFIQHISKRKGEPLKLRITGIELPQHGfrPTERIEDTGRRLKEYCRRFEVPFEYNAIASKNWETIRIEDLNI 499
                 *****************************************************9******************************99************* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 +pgE+laVn++l+ ++l d +   e+ +rd++Lkl+++++P+v+v +  + + n++ F +rf eal +ysalfd++ ++lpr++ eri  E e+ gre+
  AA90G00080 500 RPGEVLAVNSALRFKNLRDATPGEEKcPRDAFLKLIRDMNPDVFVSSIVNGSFNAPFFTTRFKEALFHYSALFDMFGSTLPRDNPERIHFEGEFYGREV 598
                 ******************9999999899*********************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +nv+aceg +r+er et+++W+ r+++aGFk+ +++++ +++ +  +++    + + v+e+s+++++gWk+r L++ S+W
  AA90G00080 599 MNVIACEGVDRVERPETYKQWQVRMMRAGFKQKSVETELVESFREKIKRWRyHKDFVVDEDSNWFLQGWKGRILFASSCW 678
                 ***********************************************99998999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.497275658IPR005202Transcription factor GRAS
PfamPF035141.7E-106302678IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MMEPNLSGFL EVVNGFEYYD ANFITNPSPD PYTSVGFGVP SSSDFDLLSN QPSIWDPTHD  60
QYSPPSGDEN DSSNTLLKYV NQILMEESIA EKQSMFYDSL ALQQTEEMLQ QVISDSQAQS  120
YIPSNDSWSN SSLHTNVLYD DSLSDYPGVS FPGSKMLRQS NENLATSSFS DAESVLQFKK  180
GLEEASKFLP NTDQWIFNPK GGVPTRDDKG LDNTSRSRKT HKREEEEEDL EEETRRSKQL  240
AVTIEDGKLT EMFDKVLLLD KECDPQMIDE ENGEIGSNKG QEIEGKKGGA RGRKKSQAID  300
FRTLLTLCAQ SISGGDKISA DDLLRQIRKQ CSPLGDSAQR LAHFFANALE TRLEGSTGPM  360
IQSYYDSITS KKRTASQILK SYKVFLSASP FMTLIYFFSN KMILDAAKDA SVLHIIDFGI  420
LYGFQWPMFI QHISKRKGEP LKLRITGIEL PQHGFRPTER IEDTGRRLKE YCRRFEVPFE  480
YNAIASKNWE TIRIEDLNIR PGEVLAVNSA LRFKNLRDAT PGEEKCPRDA FLKLIRDMNP  540
DVFVSSIVNG SFNAPFFTTR FKEALFHYSA LFDMFGSTLP RDNPERIHFE GEFYGREVMN  600
VIACEGVDRV ERPETYKQWQ VRMMRAGFKQ KSVETELVES FREKIKRWRY HKDFVVDEDS  660
NWFLQGWKGR ILFASSCWVS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-413016785374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA90G00080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417797.10.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLV4KEH50.0V4KEH5_EUTSA; Uncharacterized protein
STRINGXP_006417797.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein