PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00273
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 275aa    MW: 31612.1 Da    PI: 6.5019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00273genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.82.2e-18112171359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                Dg+ WrKYGqK++ ++++ rsYYrC+++   +C+++k+ ++ +++p v  +tY g+H+++
  AA8G00273 112 DGFLWRKYGQKHIIKTNHQRSYYRCAYNnddHCKARKQEQKIKDNPPVYRTTYFGHHTCK 171
                9**************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.236105173IPR003657WRKY domain
SuperFamilySSF1182904.58E-19108172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-19108171IPR003657WRKY domain
SMARTSM007744.8E-28110172IPR003657WRKY domain
PfamPF031061.6E-19112171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKKNSIHQKA VQTILYGQSC AKKLKLKLEN PTAENEHGSV SSQDLTKSIL DCFSNAISIL  60
SDKSLVSSDD QSSDLSSTSS SYSLIPNKKR KIKSIDTSEI WWDDSPNPVY YDGFLWRKYG  120
QKHIIKTNHQ RSYYRCAYNN DDHCKARKQE QKIKDNPPVY RTTYFGHHTC KINHHHHHHD  180
HHHYDHFDDL EGSRMIQFGK VIGQEEGYNM KMESITGDYD KVCEEHVIDE IESPPSDCYP  240
FSLSSCGSES TAFSLDLLVN GLDSFDCYEL FDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141121711069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120648.12e-87PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF13e-75WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A1J3D2N62e-93A0A1J3D2N6_NOCCA; Putative WRKY transcription factor 38
STRINGBra002421.1-P9e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-67WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]