PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00048
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 601aa    MW: 66347.6 Da    PI: 4.3487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00048genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.45.9e-1142326012374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L+ecA+ +s+++  +a ++L r++e +s+ gdp++Rl +yfteAL +rl+      ++++++ + +  + +e + ++k++++++P+ kf+hltaNqa
  AA8G00048 232 LKSLYECAQ-ISESEPDEALETLVRIRESVSELGDPTERLGFYFTEALCNRLSPD----SESMKSPAMAAVSLEELILSYKTLNDACPYSKFAHLTANQA 326
                5789****9.888899*************************************93....344445555555699************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                Ilea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fef + + + ++ l+ +++r+++
  AA8G00048 327 ILEATENSSKIHIVDFGIVQGIQWAALLQALATRSSGKPtQIRVSGIPAPSLGefPEPSLLATGNRLREFAKVLDLNFEFIP-ILTPIHLLNGSSFRIES 425
                ***********************************77776**********99999***************************.799************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E laVn++lql++ll+e++++ +   + L+l ksl+P++v++ e e+++n+  F++r+ +a+++ysalf+sle kl r+seeri vEr+l+gr+i+ v+
  AA8G00048 426 DEILAVNFMLQLYKLLNETAAIVD---TALRLAKSLNPRIVTLGEYEVSLNRVGFANRVKNAIQFYSALFESLEPKLKRDSEERIRVERVLFGRRISAVI 522
                ****************99999999...************************************************************************* PP

       GRAS 299 acegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  e++e  rer+e++e+Wr+ +e+aGF++v+ls++a++qa+ ll  ++ s  y++ e++  ++ + W+d pL++vS+Wr
  AA8G00048 523 GSEKSEnERERMEEKEQWRMLMEKAGFGSVKLSNYAVSQAEILLWDYHySPLYSLVESDPGFIsMAWNDVPLLTVSSWR 601
                ***999789***************************************999*******999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.116205579IPR005202Transcription factor GRAS
PfamPF035142.0E-111232601IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQDNQIFGIN PLSLNPWPTT TLGYGLPGSG  60
FTDPFQVTAG GDSGDPGFQF PHLDHHHPAS GGGGGFRLSD FGGGTTGEFE SDEWMESLIG  120
GGDATAAVVV EGSNLQPDCD TWQSNNTEFI IYGPDPFSVC PSRLSVPCSQ PSDLNRVIFT  180
EKNEPPPVSS TLWSPSPSIA IPIAQPETKE LEFNDSGDGA YSPDFDLDTP LLKSLYECAQ  240
ISESEPDEAL ETLVRIRESV SELGDPTERL GFYFTEALCN RLSPDSESMK SPAMAAVSLE  300
ELILSYKTLN DACPYSKFAH LTANQAILEA TENSSKIHIV DFGIVQGIQW AALLQALATR  360
SSGKPTQIRV SGIPAPSLGE FPEPSLLATG NRLREFAKVL DLNFEFIPIL TPIHLLNGSS  420
FRIESDEILA VNFMLQLYKL LNETAAIVDT ALRLAKSLNP RIVTLGEYEV SLNRVGFANR  480
VKNAIQFYSA LFESLEPKLK RDSEERIRVE RVLFGRRISA VIGSEKSENE RERMEEKEQW  540
RMLMEKAGFG SVKLSNYAVS QAEILLWDYH YSPLYSLVES DPGFISMAWN DVPLLTVSSW  600
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462296012375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393872.10.0scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLE4MVR50.0E4MVR5_EUTHA; mRNA, clone: RTFL01-01-I07
TrEMBLV4KUV40.0V4KUV4_EUTSA; Uncharacterized protein
STRINGXP_006393872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]