PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00382
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 444aa    MW: 50563.4 Da    PI: 7.3003
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00382genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-19299349256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  AA87G00382 299 LYRGVRQRH-WGKWVAEIRLPKN---RTRVWLGTFETAEQAATAYDTAAYLLRGE 349
                 59******9.**********965...5***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.04E-22298358No hitNo description
SMARTSM003803.4E-36299362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-32299357IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22299357IPR016177DNA-binding domain
PROSITE profilePS5103222.827299356IPR001471AP2/ERF domain
PRINTSPR003677.5E-11300311IPR001471AP2/ERF domain
PfamPF008476.8E-12300349IPR001471AP2/ERF domain
PRINTSPR003677.5E-11322338IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
METNFINSSR LFMNILNSAT QTQLLEVPRI LEDMRSLSSC SCSSTSPSLS LSPPSSSSSS  60
SPTYFGLVDE FTTSLEAPLP RNILETSQSR FQSQLLDSSK LAPNLTLFLK EPKLLQLSQS  120
HQDQDMSYSF PSATNSYSYN QSDDENSWKS TKEWIAINKF LQLSQSHQDQ SVTNDFSSNN  180
HNYNQSNNEN ISKSDKEWIK INKLLQLSQS HQDNQDQDIV SILPSIINSY SHDQSEDDKN  240
RWKSNKEWVE INKTLTNYPS KGFANYWLST TKTQPMKVIG STKKSNNKTN NNNNLFQKLY  300
RGVRQRHWGK WVAEIRLPKN RTRVWLGTFE TAEQAATAYD TAAYLLRGEY AHLNFPHLKH  360
QLKTGPLCRM IAKLLESKIQ QISSQVISSN DNSNLETIKI KKEKNGEVLE EVLMEADGVQ  420
LSRMPSLDID LIWDALSLPP PTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21298356160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21298356463ATERF1
3gcc_A6e-21298356463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00382
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440558.12e-89PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ06e-85ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLR0F9761e-86R0F976_9BRAS; Uncharacterized protein
STRINGXP_010440558.17e-89(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-66ERF family protein