PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00143
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27387.7 Da    PI: 5.448
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00143genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1976129356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t eq++ Le+ Fe+++++ ae+++eLAkklgL++rqV +WFqNr+a+ k
  AA87G00143  76 KKRRLTIEQVNLLEKSFEEDNKLEAERKTELAKKLGLPQRQVAIWFQNRKARCK 129
                 56689***********************************************98 PP
2HD-ZIP_I/II115.23.8e-3775165191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv+lLE+sFee++kLe erK+ela++Lgl +rqva+WFqnr+AR k kq+E+dy+ Lk++yd+l e++e + +e+e+Lr+++
   AA87G00143  75 EKKRRLTIEQVNLLEKSFEEDNKLEAERKTELAKKLGLPQRQVAIWFQNRKARCKIKQIERDYNLLKACYDSLLEKHEFVITENEKLRSKV 165
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.09E-1862132IPR009057Homeodomain-like
PROSITE profilePS5007116.95771131IPR001356Homeobox domain
SMARTSM003895.1E-1974135IPR001356Homeobox domain
PfamPF000466.9E-1776129IPR001356Homeobox domain
CDDcd000869.39E-1776132No hitNo description
Gene3DG3DSA:1.10.10.607.0E-1978138IPR009057Homeodomain-like
PRINTSPR000311.7E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000311.7E-6111127IPR000047Helix-turn-helix motif
PfamPF021831.6E-13131172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDSNFGYSDR SVSDGNSLFL ENLVLVLPGS KSAMDMDSPS MTKNSLKLGT KSAMKMDEHF  60
SSIIDEEYND NQLPEKKRRL TIEQVNLLEK SFEEDNKLEA ERKTELAKKL GLPQRQVAIW  120
FQNRKARCKI KQIERDYNLL KACYDSLLEK HEFVITENEK LRSKVLTLTE KLLQNGTSPE  180
PNTNQTQHKL SSKGDNETDI YSTAQAPLAN QGYLTNVLTV VDHQSSDESF SWWVWSNQS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590148.13e-71PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_013700742.13e-71homeobox-leucine zipper protein HAT5-like
RefseqXP_013700743.13e-71homeobox-leucine zipper protein HAT5-like
SwissprotQ022835e-47HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1J3EYU05e-78A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1J3HX776e-78A0A1J3HX77_NOCCA; Homeobox-leucine zipper protein HAT5
STRINGA0A087GTD28e-74(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163821113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-49homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]