PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA87G00056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | TALE | ||||||||
Protein Properties | Length: 575aa MW: 65603.9 Da PI: 6.9232 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.2e-09 | 347 | 384 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + AA87G00056 347 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 384 554459******************************88 PP | |||||||
2 | BELL | 72.5 | 7.1e-24 | 212 | 274 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+k+kL+s+lee+++rY +++Fe+++g+g+a++Yt+lA +a+SrhFrcLkd i++qi AA87G00056 212 EFMELQKRKSKLISMLEELKRRYA---------VAAFETAVGIGAAEIYTALAARAMSRHFRCLKDGIVSQI 274 679********************5.........99************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 3.6E-32 | 136 | 270 | IPR006563 | POX domain |
SMART | SM00574 | 2.3E-46 | 142 | 272 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.034 | 325 | 388 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.99E-11 | 328 | 389 | No hit | No description |
SMART | SM00389 | 4.5E-9 | 328 | 392 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.61E-17 | 329 | 396 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 331 | 395 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.5E-18 | 345 | 384 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MTRDHHHQFY GHHHHHQQQQ MMNQIQGFDE ANHHYFGSNT NMGMMIDFSK QQHHHNENLL 60 MVNNDVDHSH HHQNQNQRQS QGLSLSLSSS NPTSINLQFQ QQEGYSGKST QSQNLQHSHQ 120 VMMMMMMNNN HHQFQIGSSK YLSPTQELLS EFCSLGVKQS DEEVMKLKKK IQKAKQHQDE 180 DDDDDHHHHD NHHDNYASTS SKKHVPPLHS LEFMELQKRK SKLISMLEEL KRRYAVAAFE 240 TAVGIGAAEI YTALAARAMS RHFRCLKDGI VSQIQETSQA LGEKEDQDNN RGVSIAPRGE 300 TPRLKLLDQA LRQQKSFRQM SLVDAHPWRP QRGLPERAVT ALRAWLFEHF LHPYPSDVDK 360 HILARQTGLS RSQVSNWFIN ARVRLWKPMI EEMYCEETRI DQDHINHHNH DHNKNDDGSI 420 SILNPMINID SKPDHNQLIR IEPESLSSIV TNPTTKINHK NDLNQGAATT SFGSTFDFSL 480 YGNQAVTYAG EREGTTRGVS LTLGLQRNDG NGGVSLAFSP VTVGSQGGAL FYGREHMEDC 540 QQGSVEYGAS MLDGDQSQNL PYRNLMGAQL LHDIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 334 | 392 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 334 | 392 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA87G00056 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405354.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | E4MWG9 | 0.0 | E4MWG9_EUTHA; mRNA, clone: RTFL01-17-O06 | ||||
TrEMBL | V4LWA4 | 0.0 | V4LWA4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405354.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Publications ? help Back to Top | |||
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