PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA82G00008

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 101aa MW: 11408.5 Da PI: 5.5711

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA82G00008	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.4	4.6e-17	4	76	17	96
E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +pk f+++h g+ +++ t +l++ s +Wevk+ ++++ l +GW++F+ a++L++gDfvvF+++g+++f +v+ AA82G00008 4 DIPKAFFSKHikGS--NNGNTAKLKSdASEITWEVKM--NGRR----LCDGWEDFAVAHDLRVGDFVVFRHEGEMTF--HVTP 76 59******8443..45668999986888***..8887....999******************9998888..7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.605	1	80	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-13	2	80	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.3E-20	5	82	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.35E-17	5	77	No hit	No description
SuperFamily	SSF101936	5.3E-18	5	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.6E-12	5	72	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MKKDIPKAFF SKHIKGSNNG NTAKLKSDAS EITWEVKMNG RRLCDGWEDF AVAHDLRVGD 60 FVVFRHEGEM TFHVTPFGPS CCEVQYAPFC TNNEDTTDDA X

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA82G00008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014114.1	1e-41	B3 domain-containing protein REM10
Swissprot	Q8H2D0	9e-41	REM7_ARATH; B3 domain-containing protein REM7
TrEMBL	A0A1J3ETM5	4e-41	A0A1J3ETM5_NOCCA; B3 domain-containing protein REM10 (Fragment)
TrEMBL	V4LRL3	3e-40	V4LRL3_EUTSA; Uncharacterized protein
STRING	XP_006405016.1	6e-41	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31660.1	4e-43	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]