PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA79G00042
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 139aa    MW: 16302.1 Da    PI: 9.7914
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA79G00042genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i++k++rqv+f+kRrng+lKKA+ELS+LCda++a+i+fs++ kly +ss
  AA79G00042  9 KKIKEKIKRQVSFAKRRNGLLKKAHELSILCDAQIALILFSENHKLYHFSS 59
                689**********************************************96 PP
2K-box20.81.6e-08911382269
       K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 + Lk+eie+L+ ++  + G +L+ Ls+ ++ +Le qL++sl ++ ++K
  AA79G00042  91 EALKREIETLKLNLELYGGHNLTILSFDQILRLELQLQSSLHNVQARK 138
                 579********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.002161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-29386IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.81783139IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MRRGKIEIKK IKEKIKRQVS FAKRRNGLLK KAHELSILCD AQIALILFSE NHKLYHFSSD  60
STNIDDIILR YQMCMQQERG HECTNCVEIK EALKREIETL KLNLELYGGH NLTILSFDQI  120
LRLELQLQSS LHNVQARKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-20195190MEF2 CHIMERA
6byy_B5e-20195190MEF2 CHIMERA
6byy_C5e-20195190MEF2 CHIMERA
6byy_D5e-20195190MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117RRGKIEIKKIKEKIKRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA79G00042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306362.24e-48agamous-like MADS-box protein AGL63
SwissprotQ9SA072e-46AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A2H4FR439e-47A0A2H4FR43_9BRAS; MADS-box transcription factor AGL63
STRINGCagra.1508s0081.1.p5e-46(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.16e-43GORDITA
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]