PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA77G00014
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 314aa    MW: 36019.5 Da    PI: 4.6813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA77G00014genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31149206359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  AA77G00014 149 DMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 206
                 99************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30134208IPR003657WRKY domain
SuperFamilySSF1182901.31E-26141208IPR003657WRKY domain
PROSITE profilePS5081132.822142208IPR003657WRKY domain
SMARTSM007748.9E-39147207IPR003657WRKY domain
PfamPF031065.1E-26149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSEDWDLFAV VRSCTSSSIE TKLSGDEKQE QKPLSYNLKI QELPQESSNS CNELHDSCKP  60
FFLKQEQVLE SQEVKQELSD VLRVFPNSVS SSSSSSSVFV FRGQRDQQQQ QQQQEILQQA  120
NSTPVRSRKR KNQQKRTICH VTQENLSCDM WAWRKYGQKP IKGSPYPRNY YRCSSSKGCL  180
ARKQVERSNL DPNIFIVTYT GEHTHPPPTH RNSLAGSTRN KSQPITKPPQ PNKAQDQQLH  240
LSPNTPLNEN DDVQEDEEIE EIEEEDDEEE DDDVDDLLIP NLTVKDQDRD DLFSNMQVFT  300
RNFSSCSAGS TVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191492091880Disease resistance protein RRS1
5w3x_D4e-191492091880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA77G00014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123982e-93EU912398.1 Brassica napus WRKY27-1 transcription factor (WRKY27-1) mRNA, partial cds.
GenBankKC2465732e-93KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442827.15e-97PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX83e-96WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A1J3E2741e-108A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRINGA0A087GAI13e-99(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-80WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]