PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA6G00272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 74aa MW: 8674.19 Da PI: 10.4602 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.7 | 8.1e-31 | 15 | 66 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt +LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ YR AA6G00272 15 PRLRWTVDLHNCFVQAVEQLGGENRATPKMVLQLMDVRGLTISHVKSHLQ-YR 66 8************************************************9.66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-30 | 11 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.524 | 11 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-15 | 13 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-23 | 15 | 65 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 16 | 64 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MKDPIVRPYV RSKIPRLRWT VDLHNCFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK 60 SHLQYRSMKQ EETI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-19 | 16 | 69 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-19 | 16 | 69 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-19 | 16 | 69 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-19 | 16 | 69 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-19 | 16 | 69 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA6G00272 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001329768.1 | 2e-39 | Myb-like DNA-binding domain protein | ||||
Refseq | XP_006289552.2 | 2e-39 | transcription repressor KAN1 isoform X1 | ||||
Refseq | XP_023637166.1 | 2e-39 | protein PHOSPHATE STARVATION RESPONSE 3 isoform X2 | ||||
Swissprot | Q700D9 | 1e-25 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0HBQ0 | 2e-38 | R0HBQ0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7199s0006.1.p | 5e-39 | (Boechera stricta) | ||||
STRING | XP_006289552.1 | 3e-39 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 4e-32 | G2-like family protein |