PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00227
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 316aa    MW: 35987.7 Da    PI: 4.3292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00227genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.5e-061982361255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk Lq
  AA6G00227 198 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAIEYIKFLQ 236
                677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.208186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11196244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-7196239No hitNo description
SMARTSM003534.8E-4197241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-10200244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTEEFETISA GVSTGTWWNP PPNTAILYSL PRSTEISLDF ANFPWQNFEN NDHEIYDHND  60
DDDHHTYLPT SQISSLNQSI MNDEELKLNP INSFFEGLFD PNDQFLSDSW KKSKISNPKS  120
ELSENFPFLD NMFLIDSEAE SFLDHEIQQQ TQEQHYKNLT SKALYDQKSE ESAEKSDENS  180
VKRPRLDTLS PLPSFKVRKE KLGDRITALQ QLVSPFGKTD TASVLNEAIE YIKFLQEQVT  240
VLSNPDKNTI ESVQQQQCSD KKSSNNQECS SRRQDLKSRG LCLMPISTTY PVAAAAAASA  300
EMNTSDFWNL PFSVTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636444.11e-115transcription factor bHLH114
SwissprotQ9M0X81e-114BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A087GQR81e-131A0A087GQR8_ARAAL; Uncharacterized protein
STRINGA0A087GQR81e-132(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.13e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]