PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00039
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 279aa    MW: 31378.1 Da    PI: 8.7812
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00039genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.66e-332377155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  AA6G00039 23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 77
               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-312079IPR009057Homeodomain-like
PROSITE profilePS5129412.2852080IPR017930Myb domain
SuperFamilySSF466892.15E-162380IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-242378IPR006447Myb domain, plants
PfamPF002491.6E-92576IPR001005SANT/Myb domain
PfamPF143793.4E-19129174IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDRTTLNGFG YENGGVMMTR DPKPRLRWTA DLHDRFVDAV AKLGGADKAT PKSVLKLMGL  60
KGLTLYHLKS HLQKYRLGQQ QGKKQNRTEH NKENAGSSYM HFDNCSQGGG ISNASGFDNH  120
HRQSGNVPFA DAVRHQLDAQ QRFQEQLEVQ KKLQMRMEAQ GKYLLTLLEK AQKTIPGNIP  180
CDATETEKTQ FSDFNLALSG LVGNNNEDDH KNETSQIHGD SSIDFRVCRE EKKEERRDAG  240
IKPETGFVHF DLNSKTGHDL MNSGNYGIDL KPNVIGNRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-192376154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937771e-159AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.
GenBankBT0120031e-159BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281686.21e-158myb family transcription factor PHL11
SwissprotC0SVS41e-157PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A087GNV01e-159A0A087GNV0_ARAAL; Uncharacterized protein
STRINGA0A087GNV01e-160(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-148G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]