PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA68G00026
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GeBP
Protein Properties Length: 333aa    MW: 37449 Da    PI: 7.7226
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA68G00026genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.55.9e-2686174397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 ++++w+ eDei++L+G+ d++++ g  + +++d f++++k+ i+ k+sk+ql+ K r+LKk+f+++  k++ gkep f    d+++f ls+++Wg
  AA68G00026  86 SKMIWNREDEIAILKGIADYQNEAG--VISHTDSFFNYMKSVIHTKFSKEQLMRKTRKLKKRFQDNLMKVNAGKEPCF----DSECFALSNILWG 174
                 799*****************99999..678999******************************************999....6789********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-2087174IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGSKRRLHYE DDSSYSESDS DSSGGETELN LKATPTSTPK PTLTPTKKSP LKSDSKHAIS  60
EAVEGTPSRL RKRKKKQTSS YLSNDSKMIW NREDEIAILK GIADYQNEAG VISHTDSFFN  120
YMKSVIHTKF SKEQLMRKTR KLKKRFQDNL MKVNAGKEPC FDSECFALSN ILWGNHDEAE  180
GADMDMDKDK AKEPRSSRSR SRVMTPMKHG EMTNGKPKDD APTEGDSSEN IPSDNGDNEA  240
EKSMENGARG KKKEEEDDGA DELRALQDAL ETTMFLHLGD YPKSMLLQNL KTLGVKERKK  300
LSDEWKSLVV QEMLLKSKKQ AFSAKVAEAA VHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA68G00026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14280.13e-31DNA-binding storekeeper protein-related