PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00356
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 358aa    MW: 40665.3 Da    PI: 5.6679
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00356genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.2e-32205260156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+r++W+++LH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  AA65G00356 205 KQRRCWSSQLHKRFLNALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 260
                 79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.622202262IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-28203263IPR009057Homeodomain-like
SuperFamilySSF466892.91E-17203263IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-28205260IPR006447Myb domain, plants
PfamPF002499.9E-7207258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016036Biological Processcellular response to phosphate starvation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0080022Biological Processprimary root development
GO:1901699Biological Processcellular response to nitrogen compound
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNQKRERCGQ YIEALEEERR KIHVFKRELP LCYDLVSQAI EDCKKEISEI STTTATENLY  60
GQSECSEQTT GECGPVLEQF LFIKDTSTMT IIDRDDEEED EEFDDEHGNH DPDKDSDKDS  120
DDKNGTKFDW LKSVQLWNQP DPLLPKEGRL QQGNMEMVVE VNRDESIASQ PLLGRGNGSD  180
LVLISGGSGG GKKREAEKDN EGRRKQRRCW SSQLHKRFLN ALQQLGGPHV ATPKQIRELM  240
KVDGLTNDEV KSHLQKYRLH TRRPNQTVPN NRNAQTQHFV VVGGVWVPQA EYSTCKTTVS  300
TTTTGIYGPM AAPPPPQWPR HSNYRPSILI EDHSEEVVRC SSPAMSSSTR PNLKDFIK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00140DAPTransfer from AT1G13300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00356
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495195.11e-163PREDICTED: myb family transcription factor EFM-like isoform X1
SwissprotQ9FX671e-156HRS1_ARATH; Transcription factor HRS1
TrEMBLD7KQE41e-158D7KQE4_ARALL; Myb family transcription factor
STRINGBostr.13671s0116.1.p1e-164(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135081728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.11e-135G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]