PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00101
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family FAR1
Protein Properties Length: 688aa    MW: 78973.8 Da    PI: 6.2088
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00101genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.51.2e-2472163190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke    + +w+v+++++ HnHel 
  AA65G00101  72 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgTTQWYVSQFSNIHNHELL 163
                 69********************8888.******************************************998777899*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2272163IPR004330FAR1 DNA binding domain
PfamPF105513.7E-21295387IPR018289MULE transposase domain
PROSITE profilePS509669.396564602IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-7574602IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-5577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MALKPLNNIW IRRQQCPCGD WKCYIRLEGD DQTVSSCHIT KSEMETTSSS PYDTVFMPYV  60
GQIFRTDDEA FEYYSTFARK SGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE  120
HPRERKSVRC GCDAKLYLTK EIVDGTTQWY VSQFSNIHNH ELLEDDQVRL LPAYRKIQQA  180
DQDRILLLSK AGFPVNRIVK LLELEKGLQP GQLPFIEKDV RNFVRACKKT VQENDAFLAE  240
KRETDMLELL ESCKALAERD MDFAYDYTSD DNQKVENLSW TYGDSIQAYS LYGDVVVFDT  300
AYRSITYDLL LGVFFGIDNN GKAILLGCFL LQDESCRSFT WALQTFVRFM GGRHPQTILT  360
DIDTGLKDAI AREMSNTNHV IFMWHIISKL SSWFSQTLGS HYDEFRPGFE MLCQAVNADE  420
FEQQWNLLIT RFGIVSDKHA ALLYTCRASW SPCYIREHFV AQTMEAEFNL SLDSFLKRIV  480
AGQTCIQALV EQVSVAATLA KQIPQRFPYS SLKTCMPMEE HARGVLTPYA FSLLQNEMVL  540
SMQYAVSEMA NGPFILHHFK KMEGECCVIW NPENEEIHCS CKEFEHSGIL CRHSLRVLTM  600
KNCFHIPDQY FLVRWRQGSS LINAENQTGQ GIGEDDAAQT FHSLTETLLT ESLISKDRID  660
YVNKELTGVI DRVRNVTPGS ACISSHGC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007204.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1J3E2X30.0A0A1J3E2X3_NOCCA; Uncharacterized protein
STRINGXP_006395020.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]