PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA65G00080

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 683aa MW: 77939.4 Da PI: 7.8694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA65G00080	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.4e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w+vt + ++HnHel AA65G00080 62 EFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNEGKPQRNRRSSRCGCQAYLRISKITelgSTEWRVTGFANHHNHELL 155 6************9998877356667999***********9999*****************9989999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-16	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-20	278	368	IPR018289	MULE transposase domain
Pfam	PF04434	6.1E-9	553	587	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.829	556	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MSDDAGQMLL IYDDPSDHRS LSLDDASSTE ESPNGTTLSL EAVNDAIPYI GQRFSTHDAA 60 YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLNE GKPQRNRRSS 120 RCGCQAYLRI SKITELGSTE WRVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF 180 SKTGISVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFR KLDPEDENID FLRMCQSIKE 240 KDPNFKFEYT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGIN 300 NYGVPCFFGC VLLRDENLRS WSWALQAFNG FMNGKAPQTI LTDHNMCLKE AIAAEMPTTK 360 HALCMWMIVG KFPSWFNAGL GERYNDWKAE FHRLYHLESA EEFELGWRDM VNSFGLHTNR 420 HINNLFASRS LWSLPYLRGH FLAGITLNGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFPMDDG 540 YLVRHHTKLD GGRKVYWVPQ EGIISCSCQS FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL 600 RWRRINSSSF SKSFRSNGDD HGERVQFLQN LVSSLVSEAS KSKERLEIAT EQISVLLSRI 660 REQPVSALAL REISSSVQRH FLF

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MSDDAGQMLL IYDDPSDHRS LSLDDASSTE ESPNGTTLSL EAVNDAIPYI GQRFSTHDAA  60
YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLNE GKPQRNRRSS  120
RCGCQAYLRI SKITELGSTE WRVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF  180
SKTGISVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFR KLDPEDENID FLRMCQSIKE  240
KDPNFKFEYT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGIN  300
NYGVPCFFGC VLLRDENLRS WSWALQAFNG FMNGKAPQTI LTDHNMCLKE AIAAEMPTTK  360
HALCMWMIVG KFPSWFNAGL GERYNDWKAE FHRLYHLESA EEFELGWRDM VNSFGLHTNR  420
HINNLFASRS LWSLPYLRGH FLAGITLNGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFPMDDG  540
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQS FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL  600
RWRRINSSSF SKSFRSNGDD HGERVQFLQN LVSSLVSEAS KSKERLEIAT EQISVLLSRI  660
REQPVSALAL REISSSVQRH FLF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA65G00080

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020867583.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_020867584.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_020867585.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_020867586.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	R0IH94	0.0	R0IH94_9BRAS; Uncharacterized protein
STRING	Cagra.4395s0212.1.p	0.0	(Capsella grandiflora)
STRING	Bostr.13671s0465.1.p	0.0	(Boechera stricta)
STRING	XP_006304862.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]