PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00022
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 646aa    MW: 68908.1 Da    PI: 9.5398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00022genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08227253127
                      TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktI 27 
                      r++W++eEde l+ +vk+ G g+W+ I
       AA65G00022 227 RKKWSAEEDEELIAVVKRCGEGNWAHI 253
                      789*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.003222278IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-11223276IPR009057Homeodomain-like
SuperFamilySSF466899.72E-11224276IPR009057Homeodomain-like
SMARTSM007171.7E-8226277IPR001005SANT/Myb domain
PfamPF002494.0E-6227253IPR001005SANT/Myb domain
CDDcd116609.30E-13228276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MVDSNCKTRK EFITERDIAT LLQRYSYLTL LASSIDLLCC SEFGLFSVGI CFRCRYDSTT  60
ILKLLQEIAY YAEPKMDWDE LVSKSTTGIT NAREYRLLWR HLAYRDSLPP AEDDAQPLDD  120
GSDMECELEA SPAVSLEASM EAIAHVKVMA ASYMPSGSDL LDGSTLEAPL TINIPYGLHG  180
SAQEPSESPW SSRGMNITFP VCLQKVPSTE GFGNSSASGS MASRRKRKKW SAEEDEELIA  240
VVKRCGEGNW AHIVKGDFRG ERKASQLSQR WALIKKRCDT STSVSQSGLQ RTEAQMAANH  300
ALSLAVGSHP PSKKHAVGIL PRISSHSTTE AQINGASSSQ GQQQSRQVVQ ALPRTGASLK  360
SRAIVTKTTV SSTSSSDLMV KANFVAAAAC MARPSTAASV LKAEPRKAAA GLVPKTEPVK  420
NVSTTSMSRT SGGLTVPKVE PVTSVPASNS IKAAGPANTR HVANGNLKTM TASSPSNRPL  480
LMGPCSKGPS MVSASAPFAS ASRIASNQRI FAAPVPTTLL PPKQDARKTA EPDPCKSDGG  540
RNLQARLDET SSLAVVQPNK MASTNLEMSK GRQAQSPNLL PMKNPVVQSG GHSATDQNLL  600
DRPSDKENKT AVPSISGAHA QSKEKGEVNN KVGTVIKVDN LGSKTP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868169.10.0uncharacterized protein LOC9328581 isoform X1
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGBostr.25494s0029.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein