PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00665
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 296aa    MW: 34528.7 Da    PI: 5.9046
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00665genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35321242103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei++d+++++++sw++ g+sfvv+d+ +f++ +LpkyFkh+nf+SFvRQLn+YgF+k+++e+         weF ++ F  g+++ll++ik
    AA61G00665  32 FLTKTFEIVDDPNTNHIVSWNRGGTSFVVWDPYSFSTILLPKYFKHNNFSSFVRQLNTYGFRKIETER---------WEFMNEGFLMGQRHLLKTIK 119
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
    AA61G00665 120 RRAST 124
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-5428121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3429121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3629121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNPIFNDIFP LSGGSDPPVP MEGLQELGTP PFLTKTFEIV DDPNTNHIVS WNRGGTSFVV  60
WDPYSFSTIL LPKYFKHNNF SSFVRQLNTY GFRKIETERW EFMNEGFLMG QRHLLKTIKR  120
RASTSSSSSS SSSLLLSHEP SSEAGELEQL RRDKHILVRE VSELKEKEQR ARGYIQAMEQ  180
RIEGTEKKQR HMMSFLNHAL QNPSVLQQMI GQRDNRKQRR EQLRIDHHVH VVKTEEVEHV  240
SELEALALEM QGQGRQRISD DVDRELDDGF WEELLMNNHK FDHDQEEDQD VNVLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-26111238131Heat shock factor protein 1
5d5v_B3e-26111238131Heat shock factor protein 1
5d5v_D3e-26111238131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191894.11e-124winged-helix DNA-binding transcription factor family protein
SwissprotQ9M1V51e-126HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A178VHJ61e-123A0A178VHJ6_ARATH; HSFA7B
STRINGAT3G63350.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-116HSF family protein