PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA61G00470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 61aa MW: 7004.23 Da PI: 10.8468 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 103.1 | 1e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRrng+lKKA+ELSvLCd+eva+iifss+gklye+s+ AA61G00470 9 KRIENKISRQVTFSKRRNGLLKKAYELSVLCDVEVALIIFSSRGKLYEFSN 59 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.716 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-30 | 2 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.24E-36 | 2 | 59 | No hit | No description |
PRINTS | PR00404 | 6.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MGRGRVELKR IENKISRQVT FSKRRNGLLK KAYELSVLCD VEVALIIFSS RGKLYEFSNV 60 G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-20 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 4e-20 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 4e-20 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 4e-20 | 1 | 61 | 1 | 61 | MEF2C |
6byy_A | 4e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 4e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 4e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 4e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 5e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 5e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 5e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 5e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA61G00470 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155641 | 1e-47 | KC155641.1 Gossypium hirsutum MADS box protein MADS46 mRNA, complete cds. | |||
GenBank | LN681932 | 1e-47 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-47 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134933.1 | 2e-33 | hypothetical protein PHAVU_010G087900g | ||||
Refseq | XP_020214835.1 | 2e-33 | agamous-like MADS-box protein AGL6 | ||||
Swissprot | P29386 | 5e-33 | AGL6_ARATH; Agamous-like MADS-box protein AGL6 | ||||
TrEMBL | A0A199UL70 | 3e-32 | A0A199UL70_ANACO; MADS-box transcription factor 17 | ||||
TrEMBL | C6T9C5 | 3e-32 | C6T9C5_SOYBN; Uncharacterized protein | ||||
STRING | XP_007134933.1 | 6e-33 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-35 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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