PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00432
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 259aa    MW: 28655.7 Da    PI: 7.6124
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18176210135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  AA61G00432 176 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 210
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-852259IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.14E-14169232No hitNo description
SMARTSM004013.5E-16170220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227174206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13174208IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.73E-13175222No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003207.1E-16176210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDVYGVSSPD LLRIDDLLDF SNDEIFSSSS NSNSSTSTAA TSSATDNNFN HHHHFPSAAN  60
SFHPSPPFLT DFTHDLCVPS DDAAHLEWLS QFVDDSFADF PTNPLTMTFR PEISFTGKPR  120
SRRSRAPITT AGTWAPSPES ELCHDAIKTK PNKEFGGRKQ STDSVTAADG GGIRRCTHCA  180
SEKTPQWRTG PLGPKTLCNA CGVRFKSGRL VPEYRPASSP TFVLTQHSNS HRKVMELRRQ  240
KELTRPQQST VQFPPFQTQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402573.11e-120GATA transcription factor 4
SwissprotO497431e-112GATA4_ARATH; GATA transcription factor 4
TrEMBLE4MXE91e-118E4MXE9_EUTHA; GATA transcription factor
TrEMBLV4NDG21e-118V4NDG2_EUTSA; GATA transcription factor
STRINGXP_006402573.11e-119(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-105GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]