PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00402
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 319aa    MW: 34385.4 Da    PI: 7.1531
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00402genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-18163217256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++ke+  +Lee F+++++++ +++  LA++l+Lt+rqV vWFqNrRa+ k
  AA61G00402 163 RKKLRLSKEEALVLEETFKEHSTLNPTQKLALARQLNLTTRQVEVWFQNRRARTK 217
                 788899***********************************************98 PP
2HD-ZIP_I/II117.48e-38163252191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlske + +LEe+F+e+++L+p++K +lar+L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+ en+rL+kev+eLr +l
   AA61G00402 163 RKKLRLSKEEALVLEETFKEHSTLNPTQKLALARQLNLTTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTVENQRLQKEVTELR-AL 252
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.7E-291119IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466896.42E-18149220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-17152218IPR009057Homeodomain-like
PROSITE profilePS5007117.103159219IPR001356Homeobox domain
SMARTSM003894.5E-15161223IPR001356Homeobox domain
CDDcd000866.21E-15163220No hitNo description
PfamPF000461.5E-15163217IPR001356Homeobox domain
PROSITE patternPS000270194217IPR017970Homeobox, conserved site
SMARTSM003402.0E-24219262IPR003106Leucine zipper, homeobox-associated
PfamPF021837.9E-11219253IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGERDDGLGL SLGLSLGFGQ KEPSLSLNLM PLASSASSNL HVQSRYSNSQ KIPNNWIHMF  60
QSSERNSDMR SYIQGIDMNR TPSTIIEIDA DTNANADAEA GVSSPNSTVS SVMSGKRSDL  120
AIAGGSDNNE VERASSSLGG GCGGGVGGVS DDEDGGNGED GSRKKLRLSK EEALVLEETF  180
KEHSTLNPTQ KLALARQLNL TTRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCENLTVENQ  240
RLQKEVTELR ALKLSPHLYM HMKPPTTLTM CPSCERVASS STVNSTSAAR PMGPGPGGHG  300
PMSPWAAIPL RQRPAAGSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167SRKKLRL
2211219RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882296.11e-146homeobox-leucine zipper protein HAT3
SwissprotP466021e-144HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLD7LRP71e-144D7LRP7_ARALL; Uncharacterized protein
STRINGBostr.13158s0030.1.p1e-151(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-107homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]