PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA61G00332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 29278 Da PI: 6.5137 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.5 | 1.3e-29 | 89 | 176 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p AA61G00332 89 FYNTYATKVGFVIRVSKLSRSRHDGTPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 176 9******************************************999..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-27 | 89 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMGIPLELEV TTVVNHNEIG ENSGQAMAEQ DENHNEIGEN SGQTMIVQDE NHKIDPDSIP 60 GDITDMVEAP AIEPFVGQEF DSEAAAHGFY NTYATKVGFV IRVSKLSRSR HDGTPIGRQL 120 VCNKEGYRLP SKRDKVIRQR AETRVGCRAM ILIRKENSGK WVITKFVKEH NHPLMPGRVR 180 RGCIYDQYPN EHDKIQELMQ QLAMEKKRAA TYKRHLEMLF EQIEQHNESL SKRIQHIVEN 240 VRDLEQRDHE QNQV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA61G00332 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002878273.1 | 1e-161 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_020882000.1 | 1e-161 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
TrEMBL | A0A1J3FDP8 | 1e-165 | A0A1J3FDP8_NOCCA; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | Bostr.20903s0171.1.p | 1e-162 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-163 | FAR1 family protein |