PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00191
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28525 Da    PI: 6.5329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00191genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.7e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien   rqvtfskRrng++KKA ELS+LCda+va+iifsstgk+y+yss
  AA61G00191  9 KKIENVNSRQVTFSKRRNGLMKKAGELSILCDADVAIIIFSSTGKVYDYSS 59
                68***********************************************96 PP
2K-box53.88.6e-1987178899
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 + + +++e  q++ + +k+e+e L+  + +l+G++L+ L + eL +Le+qL++sl +++++K ++ll q+e ++ +ek++ een+ Lrk++e
  AA61G00191  87 NFSPQNNEAVQRNQDSIKSEVERLKLAIERLKGKELNGLGFSELISLENQLNDSLLSVKDQKAQVLLHQVEVSRLQEKRAVEENQILRKQIE 178
                 456789999*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.216161IPR002100Transcription factor, MADS-box
CDDcd002655.72E-39269No hitNo description
SuperFamilySSF554555.36E-31275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1392177IPR002487Transcription factor, K-box
PROSITE profilePS5129711.82993183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVEIKK IENVNSRQVT FSKRRNGLMK KAGELSILCD ADVAIIIFSS TGKVYDYSSC  60
SMQEILARYG GSHIPNERRQ REQQLLNFSP QNNEAVQRNQ DSIKSEVERL KLAIERLKGK  120
ELNGLGFSEL ISLENQLNDS LLSVKDQKAQ VLLHQVEVSR LQEKRAVEEN QILRKQIEIL  180
GRGTGQNLLN QFPNGPQADV ESSSSSDDEE NENVEEHHSD TSLQLGLAPS YYTQRKKPKL  240
ELLCDNSGSQ VASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-22179179MEF2C
5f28_B6e-22179179MEF2C
5f28_C6e-22179179MEF2C
5f28_D6e-22179179MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504666.11e-117PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-113AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A087GYM21e-121A0A087GYM2_ARAAL; Uncharacterized protein
STRINGA0A087GYM21e-122(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-109AGAMOUS-like 18