PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA60G00085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | TCP | ||||||||
Protein Properties | Length: 201aa MW: 22147.9 Da PI: 10.0028 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109 | 6.9e-34 | 40 | 142 | 7 | 105 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg......kaaksaaks 97 ++++hTkv+gR RRvR++a+ aar+F+L++eLG+ +d++tieWLl+qa+++i+ +tg+++++++ + +s +++s+s ++ + +++ AA60G00085 40 VSKDRHTKVNGRSRRVRMPALAAARIFQLTRELGHRSDGETIEWLLRQAEASIITATGSGTNPSEPIstSIGSATVNSSKSAEPmmyamvA----PQNQ 134 589********************************************************99999555432222222222222224533331....3222 PP TCP 98 kksqksaa 105 +sq +++ AA60G00085 135 AQSQLQTQ 142 22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-29 | 40 | 140 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.615 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAIHKFSPTD SNLNTIPPES HPQTQISVAR KSSGRRVSAV SKDRHTKVNG RSRRVRMPAL 60 AAARIFQLTR ELGHRSDGET IEWLLRQAEA SIITATGSGT NPSEPISTSI GSATVNSSKS 120 AEPMMYAMVA PQNQAQSQLQ TQEQLSHSLP ICQLDLSQSI GIHYPVNGYS HMPFTALLLQ 180 PMTTAETESE ALEDRRRRHH N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA60G00085 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410877.2 | 1e-74 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 7e-53 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A1J3JRI9 | 1e-77 | A0A1J3JRI9_NOCCA; Transcription factor TCP11 | ||||
STRING | XP_006410877.1 | 5e-74 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 1e-52 | TCP family protein |