PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00054
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 384aa    MW: 42739.3 Da    PI: 9.8738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00054genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.8e-33149206260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  AA60G00054 149 MDGYNWRKYGQKQVKGSECPRSYYKCTHPNCPVKKKVERSI-DGQISEIVYQGEHNHSK 206
                 5****************************************.***************85 PP
2WRKY102.82e-32307364259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
  AA60G00054 307 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 364
                 8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-29139207IPR003657WRKY domain
SuperFamilySSF1182905.1E-26144207IPR003657WRKY domain
SMARTSM007746.7E-35148206IPR003657WRKY domain
PROSITE profilePS5081123.192150207IPR003657WRKY domain
PfamPF031069.7E-26150204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-31299364IPR003657WRKY domain
PROSITE profilePS5081131.135301366IPR003657WRKY domain
SuperFamilySSF1182904.84E-27302365IPR003657WRKY domain
SMARTSM007747.0E-38306365IPR003657WRKY domain
PfamPF031065.9E-26307364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEVKESERAV IAKPVASRPS CSSFRTFTEL LNTSVMVSPE SIRHESSLNA AIRPKTVRFR  60
ATGNSGVSST LQSPQGKGND INKGCEETEN KNYVVYKPKA KLVSKATVSV LANMLQGNSQ  120
QPWKQQSQTG KNVRQNGRSL TEQESTSSMD GYNWRKYGQK QVKGSECPRS YYKCTHPNCP  180
VKKKVERSID GQISEIVYQG EHNHSKPPCP LPRRASGKPP PVITTSHQGT TRQEANVYYP  240
TWNEPFEFAV PRSANSDSGC RSSQCDEGSN VEIDDLSKSK KRRNEKQSSD GGGGSETQGS  300
IDSESLEDGF RWRKYGQKVV GGNAYPRSYY RCTSANCRAR KHVERASDDP RAFITTYEGK  360
HNHHFLHTPP SSTTTSTLPH HSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27150365477Probable WRKY transcription factor 4
2lex_A2e-27150365477Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00054
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410906.11e-177WRKY transcription factor 44 isoform X4
SwissprotQ9ZUU01e-172WRK44_ARATH; WRKY transcription factor 44
TrEMBLV4M7R81e-175V4M7R8_EUTSA; Uncharacterized protein
STRINGXP_006410906.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-166WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]