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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AA5G00098 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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| Family | G2-like | ||||||||
| Protein Properties | Length: 309aa MW: 35128.1 Da PI: 4.5067 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 20.6 | 1e-06 | 1 | 19 | 36 | 54 |
G2-like 36 mkvkgLtlehvkSHLQkYR 54
m+ Lt+e+++SHLQkYR
AA5G00098 1 MNDSNLTRENIASHLQKYR 19
78899************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 1 | 24 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 309 aa Download sequence Send to blast |
MNDSNLTREN IASHLQKYRN FLKKIRENSQ IMSQIESNKT INTNFASSSQ QFKNFNPNPT 60 NIVGLHEPLN YSNQRLNRTR PNQIRPNQIE PNQIGPNQIE TNQIGPNQTE PNLLSGLHTN 120 FGYLNGIIPS NEERGNFFDP SQAFYDHRLQ QYNTTNSVLG MNFNTNVGYG GLNIDFGGPK 180 YNNGNINEGS SSMNMNNIHG PRYNSQIAHN QNYQNCEVNC ENLEEVLNGD FLEGNSNFYL 240 PHVEDGSFDN GNSNEQTSNL TVDDFEIYCP IRENNNINLE YGGVGVNDLH NQDLDEDEFV 300 KSLFIKDMS |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | AA5G00098 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM17441 | 7 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G62110.1 | 2e-08 | G2-like family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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