PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00405
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 444aa    MW: 47925.6 Da    PI: 8.777
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00405genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31198256259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  AA57G00405 198 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 256
                 7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33182258IPR003657WRKY domain
SuperFamilySSF1182904.45E-28190258IPR003657WRKY domain
PROSITE profilePS5081129.677192258IPR003657WRKY domain
SMARTSM007743.7E-37197257IPR003657WRKY domain
PfamPF031066.5E-27199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDMEDKRAKF ENEMKTAQLE DELNKIKLEN QRLKDSIGKA SSKFNTLQMQ LYAVMRQQEQ  60
HNSSQDLNHM ASMDGKVKRQ ETQTMVPRQF MDLGPSELLD AEVSSEERTT VRSRSPPSLL  120
ESSNPRENGK RLLGREESPE SESTAWGNPN KVPKQNSSSG PNSINNGNGN VIDQSAAEAT  180
MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE  240
DRSILITTYE GNHNHPLPPA AMAMASTTTA AASMLLSGSM SSQDGVMNPT NLLARAILPC  300
SSSMATISAS APFPTITLDL TNSSNPNNPN MTSNNPLMQF AQRPGFAAAL NPAVLPQVVG  360
QALYYNQQQS KFSGLQLPGQ PLQIAANSSM AESVSAASAA IASDPNFAAA LAAAITSIIN  420
GSGHQNNNNN GNNNVATSNG DNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23184260176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734026.10.0probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLA0A3P6FUH10.0A0A3P6FUH1_BRAOL; Uncharacterized protein
STRINGBostr.10089s0026.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-150WRKY DNA-binding protein 31