PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00362
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LSD
Protein Properties Length: 210aa    MW: 22823.1 Da    PI: 4.1272
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00362genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.31e-1280104125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lLsYP G+ +V+C++C tV
  AA57G00362  80 CGSCRRLLSYPKGSVHVKCSCCETV 104
                 ************************9 PP
2zf-LSD143.16.8e-14162186125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 C +C+ lL+YP+GAp+VRC++C+ V
  AA57G00362 162 CDSCKLLLMYPYGAPAVRCSSCNSV 186
                 ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.8E-1677107IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-1080104IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.0E-12159188IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-10162186IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MIGAESECAM EETQPISAPE KEEATLSPVE EEKEGPPPGW ESVVLTPSPS PLTDTVTAAV  60
DSATTTDAIP GFVEMAQLVC GSCRRLLSYP KGSVHVKCSC CETVNLVLEG TKDPSKCSLE  120
LDFNLACEWF LYVLADFLIS NFILLETVNL ILEAYQVGQV NCDSCKLLLM YPYGAPAVRC  180
SSCNSVTEIR ENNKRAPWSL QQGPLKTFSS
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108490.14e-54PREDICTED: protein LOL2
SwissprotO654263e-52LOL2_ARATH; Protein LOL2
TrEMBLA0A1J3DGV91e-53A0A1J3DGV9_NOCCA; Protein LOL2 (Fragment)
STRINGBra020902.1-P3e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-44lsd one like 2