PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00161
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 880aa    MW: 99154.7 Da    PI: 5.1545
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00161genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.2e-34161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
    AA57G00161  16 FLNKTYEMVDDPSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKNIH 103
                   9**************************************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    AA57G00161 104 RRKA 107
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3411105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6312105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE profilePS513758.67420454IPR002885Pentatricopeptide repeat
PfamPF015350.47422448IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.136455489IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.714490520IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0016495523IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.2E-5503597IPR011990Tetratricopeptide-like helical domain
PfamPF130416.8E-9521554IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.729521555IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-6523554IPR002885Pentatricopeptide repeat
SuperFamilySSF484521.33E-6532576IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007560.0015555585IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.358556582IPR002885Pentatricopeptide repeat
PfamPF130411.2E-11582630IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.529583617IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.1E-9585618IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.2E-12598727IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.215618652IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.267653683IPR002885Pentatricopeptide repeat
SuperFamilySSF484522.25E-6656823IPR011990Tetratricopeptide-like helical domain
PfamPF015350.0032658679IPR002885Pentatricopeptide repeat
SuperFamilySSF484521.33E-6668688IPR011990Tetratricopeptide-like helical domain
PfamPF130418.7E-12683731IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.364684718IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.9E-7687719IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.539719754IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-5721755IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.728755789IPR002885Pentatricopeptide repeat
PfamPF015350.011758782IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.2E-12763847IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484521.33E-6794846IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.287821855IPR002885Pentatricopeptide repeat
PfamPF015350.012827852IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLNKT YEMVDDPSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKAVHS HSLPNNLQSQ  120
TPLTDTERQR MKNQIEKLTK EKEVLLVELQ KQEEEREGFE LQVKELKERL QHMEKRQKTM  180
VSFVSQVLEK PGLALNLSPE TNDRKRRYPR KISKIGLLQD EQPLLEENQT SDSTSPPHTT  240
EQVEQLESSL ALMENLVTDS CESMVQSSRS MMMTLDVDES STCPESPPIN CVQLSIDTRP  300
KSPGIDMNLE PDVSKEQITM ATPAASAQVT GVNDVFWQQF LTENPGATEQ REVQSERKDV  360
DNKKAKSLSE IQQAHAFMLK SGIFKDTFAA SKLIAFAAVN PEPKTVSYAH SIFNRIQNPN  420
AFTHNAIIRA YANSLTPEIA LIVFREMLLG TVFPDKYSFT FALKACAAFG GFEEGEQLHG  480
LFLKSGFGFD VFVENTLVNV YGRSGFFEIA RKVLDKMPER DVVSWNSLLS AYLEKELVEA  540
ARDLFDEMEE RNIESWNFMI SGYASKGLIT EAAKLFTAMP EKDVVSWNTM ISGYAHIGCY  600
NEVLEVFKEM LNSKTKPDGF TFVNVLSACA NLGSLSQGEW VHVYINKNEV IIEGFLATAL  660
VDMYSKCGKI DKALEVFKAC SKKDVSTWNS MISGLSVHGL GQDALQIFSE MVHEGTKPNS  720
ITFITVLSAC SHVGLVDEAR KVFDSMNCVY GIEPSVEHYG CMVDLLGRMG KIEEAEELVK  780
KIPGDDAFVV LESLLGACKR FGHIEQAERI AKQLLELNPQ ESSGYVHMSN LYASNGRWDE  840
VMEVRKKMRD EKVSKKPGCS LIEINGVVHE FLAGEGLIME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-5937280110336PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414048.10.0pentatricopeptide repeat-containing protein At4g18840
SwissprotO493990.0PP321_ARATH; Pentatricopeptide repeat-containing protein At4g18840
TrEMBLV4P7G20.0V4P7G2_EUTSA; Uncharacterized protein
STRINGXP_006414048.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-155heat shock transcription factor A4A
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Liu JM, et al.
    The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1825
    [PMID:27994613]