PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA57G00087

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 321aa MW: 36304.4 Da PI: 7.3539

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA57G00087	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.4e-33	147	204	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +d +vv++tYeg+Hnh+ AA57G00087 147 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDSTVVITTYEGQHNHP 204 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.0E-35	131	206	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-29	138	206	IPR003657	WRKY domain
PROSITE profile	PS50811	32.604	141	206	IPR003657	WRKY domain
SMART	SM00774	3.8E-38	146	205	IPR003657	WRKY domain
Pfam	PF03106	1.5E-25	147	204	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MSNESKDYQY SLYEIMNLPN NYISNPFFDP SSNYTSPYDS IHKAFGLSPS NSSEVFNNSS 60 IDQELNPNNV NGEKIRVSAS SSSSEADHPG EDSGKSRRKR EAVDGINEEE EEDQSKKKVG 120 KTKKNEEKKQ REPRVSFMTK SEVDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTTQKCNVK 180 KRVERSYQDS TVVITTYEGQ HNHPIPTNLR GSSAAAAAMF SGVGSFYNNN SSPNNVDFML 240 TPRSFAHNDM LRTSSTSAYT SNAGGGHSAD VAAGYGHGHV NVNPNYHHHH HQGHQDNYHH 300 QGGEYELLKE IFPTIFFKQE H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	137	206	8	77	Probable WRKY transcription factor 4
2lex_A	3e-28	137	206	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA57G00087

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480383.1	1e-127	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	1e-111	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0D3DET2	1e-123	A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBL	A0A3P6ER93	1e-123	A0A3P6ER93_BRAOL; WRKY transcription factor
STRING	Bo7g105800.1	1e-124	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-91	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]