PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA57G00076

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 489aa MW: 54690 Da PI: 6.3548

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA57G00076	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.1	3.6e-27	235	288	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQk+R++ AA57G00076 235 KKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNIASHLQKFRMH 288 689***************.******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	17.688	1	96	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	3.95E-10	7	98	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	2.2E-10	7	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-26	231	290	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.043	231	290	IPR017930	Myb domain
SuperFamily	SSF46689	1.61E-18	233	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-25	235	288	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-8	237	285	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MFGPFLAVTT FNDETEALAA VFKNPASFHI AIVEMNPNSM NESFKFLEAA KDLPTIMIST 60 DHCITTTMKC IALGAVEFLQ KPLSIEKLNN IWQHVVHKAF NDGGNNVKES VASILHLEVD 120 TDMAKIDPST PQLKQGSRLL DDGDCQENVN FLTEKEIMED QDIDESKSVD ITDRNHGLED 180 EKVIVIKEEK LRDEEEVETE DMIDSGNVHK KEDEIKSINK QSTIKNLSSN KSNRKKVDWT 240 PELHKKFVQA VEQLGVDQAI PSRILELMKV DGLTRHNIAS HLQKFRMHRR NILPKEDHER 300 RWIQSRENHR QMQRGYNGFN GYNNQLQQRP VMAYPAPQVY PVWALPGVPT PGVVPPLWPP 360 TQTSGHPPPW HWKPPYPTVN GNAWGCPVIP PATGAFNTSP TTSGGGFQYS TGAENGFRIM 420 PATQPDEEMI DKVVKEAISK PWLPLPLGLK PPSADSVLAE LSRQGISAVP SSSSSRLING 480 SRRLRAGPT

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MFGPFLAVTT FNDETEALAA VFKNPASFHI AIVEMNPNSM NESFKFLEAA KDLPTIMIST  60
DHCITTTMKC IALGAVEFLQ KPLSIEKLNN IWQHVVHKAF NDGGNNVKES VASILHLEVD  120
TDMAKIDPST PQLKQGSRLL DDGDCQENVN FLTEKEIMED QDIDESKSVD ITDRNHGLED  180
EKVIVIKEEK LRDEEEVETE DMIDSGNVHK KEDEIKSINK QSTIKNLSSN KSNRKKVDWT  240
PELHKKFVQA VEQLGVDQAI PSRILELMKV DGLTRHNIAS HLQKFRMHRR NILPKEDHER  300
RWIQSRENHR QMQRGYNGFN GYNNQLQQRP VMAYPAPQVY PVWALPGVPT PGVVPPLWPP  360
TQTSGHPPPW HWKPPYPTVN GNAWGCPVIP PATGAFNTSP TTSGGGFQYS TGAENGFRIM  420
PATQPDEEMI DKVVKEAISK PWLPLPLGLK PPSADSVLAE LSRQGISAVP SSSSSRLING  480
SRRLRAGPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-16	234	288	1	55	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA57G00076

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB041531	7e-45	AB041531.1 Arabidopsis thaliana APRR2 mRNA for pseudo-response regulator 2, complete cds.
GenBank	AF385725	7e-45	AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBank	AY143963	7e-45	AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001190759.1	0.0	CheY-like two-component responsive regulator family protein
Refseq	NP_001329341.1	0.0	CheY-like two-component responsive regulator family protein
Refseq	NP_567548.1	0.0	CheY-like two-component responsive regulator family protein
Refseq	NP_849403.1	0.0	CheY-like two-component responsive regulator family protein
Refseq	NP_849404.2	0.0	CheY-like two-component responsive regulator family protein
Refseq	XP_010439912.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010439913.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010439915.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X2
Swissprot	Q6LA43	0.0	APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBL	D7MCX7	0.0	D7MCX7_ARALL; Pseudo-response regulator 2
STRING	AT4G18020.6	0.0	(Arabidopsis thaliana)
STRING	XP_010439912.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5746	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.6	0.0	ARR-B family protein

Publications ? help Back to Top
Gong L, et al. Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions. PLoS ONE, 2015. 10(5): p. e0128041 [PMID:26010543]