PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00050
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 373aa    MW: 41463.8 Da    PI: 4.8811
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00050genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-141564155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  AA55G00050 15 PVFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPIPEMAAAAYDVAALALKG 64
                579***975..6*********843...5************************987 PP
2AP257.24.1e-18210259255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  AA55G00050 210 IYRGVRQRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 259
                 69****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-91564IPR001471AP2/ERF domain
SMARTSM003802.7E-271678IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-251673IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-161673IPR016177DNA-binding domain
PROSITE profilePS5103219.231672IPR001471AP2/ERF domain
CDDcd000189.44E-151774No hitNo description
CDDcd000182.08E-32209269No hitNo description
PfamPF008471.3E-13209259IPR001471AP2/ERF domain
SMARTSM003803.6E-34210273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32210269IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21210269IPR016177DNA-binding domain
PROSITE profilePS5103222.418210267IPR001471AP2/ERF domain
PRINTSPR003675.2E-9211222IPR001471AP2/ERF domain
PRINTSPR003675.2E-9233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
AAASNSKKAA TGKHPVFRGI RLRNGKWVSE IREPRKTTRI WLGTYPIPEM AAAAYDVAAL  60
ALKGSDAVLN FPELVLSYKR PDSSSAEDIR VAAARAAKMK QPEPGGAKVV VEIDKEVDLL  120
DLRDEEAMLE LEMPNWLREM AEGMLMSPPR MVAPTQDESP ENRQEENSLF SGSDQNSPIS  180
EESECSPRLA ASCPKKKAGR KKFRETRHPI YRGVRQRNSG KWVCEVREPN KKSRIWLGTF  240
PTAEMAARAH DVAAIALRGR SACLNFADSV SQLRIPESTC PKEIQKAAAE AAVAFRPENS  300
EKGEDVEETT AAVTEKLEEG TSEQSEVFYM DEEEMPRLIA NMAEGMLLPP PDVTWNHNDF  360
DEEDADVSLW SFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-142082661271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200012.12e-98C-repeat-binding factor 4
SwissprotQ9FJ932e-99DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A3Q7FF311e-100A0A3Q7FF31_SOLLC; Uncharacterized protein
STRINGAT5G51990.17e-98(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-94C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]