PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA54G00259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 172aa MW: 19986.2 Da PI: 5.657 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.1 | 4.3e-29 | 22 | 81 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dD ++WrKYGqK++ g++fprsYYrCt++ +C+++k+v+rs++dp+v+++tY+g+H++ AA54G00259 22 DDIFSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSDDDPTVFDVTYRGTHTC 81 8***************************9999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.172 | 16 | 79 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-27 | 16 | 82 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-25 | 20 | 82 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-38 | 21 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 22 | 81 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MLPRWSEKVK ITPERGLEGP QDDIFSWRKY GQKDILGAKF PRSYYRCTHR STQNCWATKQ 60 VQRSDDDPTV FDVTYRGTHT CCTQTITPPE EKKKKQTKSD LLNNLRTNLT VQTDGLDGDG 120 NDVFSFPETP PFYDFSHFTE TSPIFDLGFQ FDPTVEIGAN FPTFLHESIY YY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 21 | 79 | 16 | 74 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 21 | 79 | 16 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA54G00259 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF053036 | 8e-64 | EF053036.1 Thlaspi caerulescens WRKY53 transcription factor (WRKY53) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448655.1 | 7e-87 | PREDICTED: probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 7e-84 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | R0H499 | 2e-85 | R0H499_9BRAS; Uncharacterized protein | ||||
STRING | XP_010448655.1 | 3e-86 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-82 | WRKY family protein |