PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA54G00114

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 301aa MW: 34223.6 Da PI: 8.0873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA54G00114	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.5e-06	144	163	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ AA54G00114 144 FSCHVCFKTFNRYNNLQMHM 163 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.16E-5	135	166	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.5E-4	144	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.055	144	171	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.6E-5	210	248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSMESTTHYE VSSSSSSRDY FHYSLNLFPN FTLNDDTIDP LLLSHQITLN QNQNLTLNPN 60 PNPNPNPSLL DEEEGEIEVD LSLKIGLPGT YNSIDESKES KKIDKKNGKE ILSHDAGEFI 120 ENEVSGKPYW IPAPEQIIIG FTHFSCHVCF KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT 180 QPRAMLGIPC YCCVEGCKNH IDHPRAKPLK DFRTLQTHYK RKHGHKPYSC RTCGKLLAVK 240 GDWRTHEKNC GKRWVCVCGS DFKHKRSLKD HVKAFGPTHG PYPTGLFDDQ ASSSLSHPFG 300 F

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA54G00114

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174737.2	1e-145	C2H2 and C2HC zinc fingers superfamily protein
Swissprot	Q8VWG3	1e-146	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	Q700E7	1e-143	Q700E7_ARATH; At1g34790
STRING	AT1G34790.1	1e-144	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-133	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]