PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA53G01118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9616.26 Da PI: 10.6817 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed ll +++ q+G g W+ ++r+ g++R++k+c++rw++yl AA53G01118 10 KGAWTVDEDNLLRHCIDQYGEGKWHQVPRRTGLNRCRKSCRLRWLNYL 57 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 3 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.84 | 5 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.79E-21 | 11 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-10 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 61 | 82 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MKVPSKGLTK GAWTVDEDNL LRHCIDQYGE GKWHQVPRRT GLNRCRKSCR LRWLNYLKPN 60 IKKGKFSSDE VDLLLRLHKL LG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA53G01118 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF062908 | 9e-62 | AF062908.1 Arabidopsis thaliana putative transcription factor (MYB75) mRNA, complete cds. | |||
GenBank | AK221639 | 9e-62 | AK221639.1 Arabidopsis thaliana mRNA for transcription factor, complete cds, clone: RAFL07-99-A21. | |||
GenBank | AY519563 | 9e-62 | AY519563.1 Arabidopsis thaliana MYB transcription factor (At1g56650) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511463.1 | 3e-42 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_022545155.1 | 2e-42 | transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 1e-39 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A089G5X7 | 6e-41 | A0A089G5X7_BRACM; Anthocyanin R2R3-MYB transcription factor | ||||
TrEMBL | A0A0D3CYD9 | 1e-40 | A0A0D3CYD9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A0H3XWN6 | 1e-40 | A0A0H3XWN6_RAPSA; Anthocyanin regulator | ||||
TrEMBL | A0A3P6GC00 | 1e-40 | A0A3P6GC00_BRAOL; Uncharacterized protein | ||||
TrEMBL | E5D8F4 | 1e-40 | E5D8F4_BRAOB; MYB2 | ||||
STRING | XP_010470514.1 | 2e-41 | (Camelina sativa) | ||||
STRING | XP_010511463.1 | 1e-41 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-42 | myb domain protein 113 |
Publications ? help Back to Top | |||
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