PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00817

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 281aa MW: 32741.4 Da PI: 6.1969

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00817	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.6e-32	207	262	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+ eLH+rF++a++qLGG+++AtPk+i+elmk++gLt+++vkSHLQkYRl+ AA53G00817 207 KQRRCWSRELHKRFLNALQQLGGPHVATPKQIRELMKIDGLTNDEVKSHLQKYRLH 262 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.273	204	264	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-28	205	265	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.14E-18	205	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-27	207	262	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	209	260	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MNKIKRERCN EYIEALEEER RKIHVFQREL PLCLDLVTHA IDGYRRELSV TTTENVNGKS 60 ESSEQTTGEC GTVLDLFKPI KHSSISIEEE EEEFDDEEDQ EHESHEFNDD KNMKSDWLKS 120 VQLWNQPEPV LNKSKRLEEE IETVVEVVKR NEIGSASQQP CYYNQLVSFY ETSNVSSDCD 180 RKNPTAATVS GGFGRRKETE KDGGQRKQRR CWSRELHKRF LNALQQLGGP HVATPKQIRE 240 LMKIDGLTND EVKSHLQKYR LHTRRPNQTV PNNKNSQTPH F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269\|PubMed:19341407, ECO:0000269\|PubMed:22545134, ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00817

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596362.1	1e-110	PREDICTED: probable transcription factor KAN3 isoform X1
Swissprot	Q9FX67	1e-102	HRS1_ARATH; Transcription factor HRS1
TrEMBL	A0A0D3DAU8	1e-108	A0A0D3DAU8_BRAOL; Uncharacterized protein
STRING	Bo7g082060.1	1e-109	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	3e-98	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Kiba T, et al. Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. Plant Cell, 2018. 30(4): p. 925-945 [PMID:29622567]