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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AA53G00684 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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| Family | G2-like | ||||||||
| Protein Properties | Length: 105aa MW: 11348.4 Da PI: 11.0814 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 106.9 | 1.1e-33 | 35 | 88 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH++Fv+av+ LGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR
AA53G00684 35 PRLRWTPDLHRCFVNAVDLLGGQHKATPKLVLKMMDVKGLTISHVKSHLQMYRG 88
8****************************************************5 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 7.9E-31 | 31 | 88 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 13.33 | 31 | 91 | IPR017930 | Myb domain |
| TIGRFAMs | TIGR01557 | 6.0E-25 | 35 | 88 | IPR006447 | Myb domain, plants |
| SuperFamily | SSF46689 | 1.54E-15 | 35 | 87 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 2.8E-9 | 36 | 87 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 105 aa Download sequence Send to blast |
MGKCGGRSGD VNGVRCNGNG NGGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDLLGGQHKA 60 TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKAGNMF LCKFP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 8e-21 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 8e-21 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 8e-21 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 8e-21 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 8e-21 | 36 | 90 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription factor. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | AA53G00684 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK229511 | 1e-55 | AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12. | |||
| GenBank | BT008556 | 1e-55 | BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds. | |||
| GenBank | BT008699 | 1e-55 | BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds. | |||
| GenBank | KJ138924 | 1e-55 | KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018436922.1 | 3e-50 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 | ||||
| Swissprot | Q700D9 | 4e-41 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
| TrEMBL | A0A078F8F8 | 8e-49 | A0A078F8F8_BRANA; BnaA02g26180D protein | ||||
| TrEMBL | A0A398AHD6 | 8e-49 | A0A398AHD6_BRACM; Uncharacterized protein | ||||
| TrEMBL | M4ECV8 | 8e-49 | M4ECV8_BRARP; Uncharacterized protein | ||||
| STRING | Bra026618.1-P | 1e-49 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM363 | 28 | 184 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G02060.1 | 4e-41 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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