PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00639
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 628aa    MW: 68155.1 Da    PI: 5.2462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00639genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.71.6e-1362646241374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                 lv++L++cAea+++++l+la+al++++  la +++ +m+++a+yf+eALa+r++         l pp++  +++ s++l++   f+e++P+lkf+h+ta
  AA53G00639 264 LVHTLMACAEAIQKNNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYC--------LsPPQNPIDHSLSDTLQM--HFYETCPYLKFAHFTA 352
                 689***************************************************9........413333333335555444..5*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaIl+a+eg++rvH+iDf+++qGlQWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+dl+ ++L+++
  AA53G00639 353 NQAILDAFEGKQRVHVIDFSMNQGLQWPALMQALAVRPGGPPVFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAINVEFEYRGFVANSLADLDASMLELR 451
                 *************************************************************************************************** PP

        GRAS 198 p..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 p   E++aVn+v++lh+ll +++++e+    vL +vk+++P++++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s++++++++++lg++i
  AA53G00639 452 PseIESVAVNSVFELHKLLGRPGAIEK----VLGVVKQIKPEIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGV---PSSQDKVMSEVYLGKQI 543
                 98889********************99....*********************************************998...69999************ PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +n+vaceg++r+erhetl +W  r+++aGF+p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  AA53G00639 544 CNLVACEGSDRVERHETLTQWATRFGSAGFSPANLGSNAFKQASMLLALFNgGEGYRVEENNGCLMLGWHTRPLITTSAWK 624
                 ********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.1E-3348114IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.7E-3848121No hitNo description
PROSITE profilePS5098566.391238603IPR005202Transcription factor GRAS
PfamPF035145.5E-134264624IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MKRDLLHFQG RLPNHGGASV PDSSSSSPVF GKDKMVIKKE EDGGHMDDEL LAVLGYKVKS  60
SEMAEVALKL EQLETMMGNV QEDGLSHLAT ETVHYNPAEL YTWLDSMLSE LNPAAGTSGL  120
GSSLLQPPPP PEIENSFLTG ADSSTICSIG FVGQSRVFGE PSSSDYDLRP ISGNAVYLRS  180
ESQMQNQFAI DSSSSSNQGV NNHNNKRLKC SSPDSMVTSP STAPQIGGVI GTTVTTTTVA  240
SPAAASESTR AIVLVDSQEN GVRLVHTLMA CAEAIQKNNL TLAEALVKQI GFLAVSQAGA  300
MRKVATYFAE ALARRIYCLS PPQNPIDHSL SDTLQMHFYE TCPYLKFAHF TANQAILDAF  360
EGKQRVHVID FSMNQGLQWP ALMQALAVRP GGPPVFRLTG IGPPAPDNSD HLHEVGCKLA  420
QLAEAINVEF EYRGFVANSL ADLDASMLEL RPSEIESVAV NSVFELHKLL GRPGAIEKVL  480
GVVKQIKPEI FTVVEQESNH NGPVFLDRFT ESLHYYSTLF DSLEGVPSSQ DKVMSEVYLG  540
KQICNLVACE GSDRVERHET LTQWATRFGS AGFSPANLGS NAFKQASMLL ALFNGGEGYR  600
VEENNGCLML GWHTRPLITT SAWKLMTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6425962313377Protein SCARECROW
5b3h_D7e-6425962313377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395878.10.0DELLA protein RGA2
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A1J3II220.0A0A1J3II22_NOCCA; DELLA protein RGA2
STRINGXP_006395878.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein