PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA53G00593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 291aa MW: 31922.5 Da PI: 6.3559 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.7e-34 | 15 | 69 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl AA53G00593 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.303 | 12 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-32 | 13 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-18 | 14 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-25 | 15 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 17 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-23 | 101 | 147 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MEADNGGNNP NHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTEKKESGD MLSGLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLGESSAPGE SLPESDNKTD PATPAPTSES 180 PLQDKSGKEC GPDKSLSLDE SLSSYRDPLT PDSGCNIGSP DESAGEDRPS KKPRLARGTS 240 NYTTDMVVSL PILESGLNTS YHQSDHSLAI EAHFDHPSTS LVRSETRLDK A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA53G00593 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF370550 | 1e-180 | AF370550.1 Arabidopsis thaliana transfactor-like protein (At2g01060; F23H14.3) mRNA, complete cds. | |||
GenBank | BT000013 | 1e-180 | BT000013.1 Arabidopsis thaliana transfactor-like protein (At2g01060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424838.1 | 1e-177 | PREDICTED: myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-177 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | R0FQU2 | 1e-175 | R0FQU2_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7903s0063.1.p | 1e-178 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8753 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-134 | G2-like family protein |