PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA53G00437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 20787.1 Da PI: 6.3908 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.4 | 1.9e-25 | 80 | 137 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqK +k+s++ r+YYrC+ ++C+++k+v++ ++ p ++ +tY g H ++ AA53G00437 80 DDDFSWRKYGQKFIKNSPHQRNYYRCSESNCKARKHVQKIQDSPPIFRTTYVGLHMCQ 137 79*****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.03E-24 | 77 | 137 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-26 | 78 | 137 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-30 | 79 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-24 | 80 | 137 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.172 | 80 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MLTDSDQKKV AAAILRGQEN AGNLKAMIDP TLSVHVDTIL ESFSTCLSLL GSSSHQSNKK 60 RKSFEEEELV RDSPTLINDD DDFSWRKYGQ KFIKNSPHQR NYYRCSESNC KARKHVQKIQ 120 DSPPIFRTTY VGLHMCQAQL FLDSAHENGS SRVIQFDQAS NEHQETNQIT NQDLLNDDFW 180 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-14 | 80 | 134 | 18 | 72 | Probable WRKY transcription factor 4 |
2lex_A | 1e-14 | 80 | 134 | 18 | 72 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA53G00437 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619271.1 | 2e-33 | PREDICTED: probable WRKY transcription factor 64 | ||||
Refseq | XP_018512184.1 | 2e-33 | PREDICTED: probable WRKY transcription factor 63 isoform X2 | ||||
TrEMBL | A0A3P6AQ63 | 3e-32 | A0A3P6AQ63_BRACM; Uncharacterized protein | ||||
STRING | Bra008459.1-P | 8e-33 | (Brassica rapa) | ||||
STRING | Bo2g095820.1 | 7e-33 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66560.1 | 3e-36 | WRKY DNA-binding protein 64 |