PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA52G00002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28727.2 Da PI: 6.5178 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.4e-09 | 24 | 71 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 W++eE + + +a + + + +W +Ia++++ g++ ++ + ++k+ AA52G00002 24 QWSKEENKMFEKALAIYTEEdspdRWFKIAEMIP-GKSVVDVMNQYNKL 71 7*****************99**************.************97 PP | |||||||
2 | Myb_DNA-binding | 40 | 9.2e-13 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky AA52G00002 125 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 169 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.293 | 20 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 6.7E-9 | 21 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.33E-11 | 23 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 24 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-8 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-9 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 18.771 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-15 | 120 | 173 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-11 | 122 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-17 | 122 | 173 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-10 | 122 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.12E-9 | 125 | 169 | No hit | No description |
Pfam | PF00249 | 4.0E-10 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
METLQPLSHH FINEDLMNLQ SSSQWSKEEN KMFEKALAIY TEEDSPDRWF KIAEMIPGKS 60 VVDVMNQYNK LEEDVLDIES GRVPIPGYPP ACSSDPLGFE RDVACRKRSN GNSKGCDQER 120 RKGVPWTEEE HRRFLLGLLK YGKGDWRNIS RNFVVSKTPT QVASHAQKYY QRQISGTKDK 180 RRPSIHDITT VNLLNANLMR SSSEFNPDLG FNSDEGMMFS RQNMLSESLF SPSISHFGDA 240 GKFTGENCFG AGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 21 | 88 | 7 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00347 | DAP | Transfer from AT3G11280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA52G00002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486776.1 | 1e-122 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-70 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3N6Q551 | 1e-119 | A0A3N6Q551_BRACR; Uncharacterized protein | ||||
TrEMBL | V4M940 | 1e-119 | V4M940_EUTSA; Uncharacterized protein | ||||
STRING | XP_010486776.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4340 | 26 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-123 | MYB family protein |
Publications ? help Back to Top | |||
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