PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA50G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 285aa    MW: 30991.8 Da    PI: 6.8977
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA50G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.9e-20209243135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  AA50G00012 209 CQHCGAEKTPQWRAGPSGPKTLCNACGVRYKSGRL 243
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-15201265No hitNo description
PROSITE profilePS5011412.519203239IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-18203253IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15207241IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.18E-15208256No hitNo description
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PfamPF003202.0E-17209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEIESFMEDL LNFSVSEGEE DDEGEGRDME DIMPPRNITR RKTGLRHAGP FGLFTSDDPG  60
VVEEEDLEWI SNKDAFPVIE TFVGVLPSEQ YDITSPERLA TETKQLSPVS VLEISSNSTT  120
TTTTTTTSNS SGGSIGNTSA VTAAAATTTT TTTTIMSCCV GLNVPVKARS KRRRTGRRDL  180
RVLWTGNPEQ GIQKKKVYAV AAAAMGRKCQ HCGAEKTPQW RAGPSGPKTL CNACGVRYKS  240
GRLVPEYRPA SSPTFSAELH SNSHRKIVEM RKQILPGDGD RKDCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA50G00012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009589.11e-122GATA transcription factor 1
SwissprotQ8LAU91e-116GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1J3EDR91e-121A0A1J3EDR9_NOCCA; GATA transcription factor 1
TrEMBLA0A1J3GHK41e-121A0A1J3GHK4_NOCCA; GATA transcription factor 1
STRINGXP_006418795.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-108GATA transcription factor 1