PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA4G00238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7002.79 Da PI: 11.0568 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.9 | 2.7e-23 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krienks rqvtfskRrng++ KA LSvLC+ vav+++s tgkly AA4G00238 9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCESSVAVLVVSATGKLYN 56 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.217 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MGRRKVEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCE SSVAVLVVSA TGKLYNSSSG 60 DDX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-17 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 9e-17 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 9e-17 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 9e-17 | 1 | 61 | 1 | 61 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA4G00238 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150584.1 | 8e-34 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 | ||||
Refseq | XP_009150585.1 | 8e-34 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X2 | ||||
Refseq | XP_024007051.1 | 8e-34 | LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL27 | ||||
Swissprot | Q9FPN7 | 2e-32 | AGL31_ARATH; Agamous-like MADS-box protein AGL31 | ||||
TrEMBL | A0A3N6RWK1 | 1e-32 | A0A3N6RWK1_BRACR; Uncharacterized protein (Fragment) | ||||
STRING | Bra024350.1-P | 3e-33 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 2e-35 | AGAMOUS-like 31 |
Publications ? help Back to Top | |||
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