PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00058
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 475aa    MW: 53412.3 Da    PI: 6.0346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00058genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.42.7e-1497119426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C+f++rtGtCkyG++CkF+H+
  AA4G00058  97 EDCSFYMRTGTCKYGSTCKFNHP 119
                89********************9 PP
2zf-CCCH34.14.7e-11186206525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C+f++rtG CkyGd+C+F+H
  AA4G00058 186 ECKFYFRTGGCKYGDSCRFSH 206
                6******************** PP
3zf-CCCH38.91.4e-12229253226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C+f++r+G Ck+G+ CkF+H+
  AA4G00058 229 GEKECPFYMRNGSCKFGADCKFNHP 253
                7899********************9 PP
4zf-CCCH20.67.7e-07376401227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG Ck+  +Ck++H++
  AA4G00058 376 DQPECSYYLKTGDCKFKYKCKYHHPK 401
                689*********************96 PP
5zf-CCCH33.66.7e-11422446226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C++++r+G+Ck+G+ C+F H+
  AA4G00058 422 DQSMCSHYSRYGICKFGPACRFDHS 446
                5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.04E-691121IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.55893121IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-1197119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-599118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7181209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469181209IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6181208IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8186206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6187208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042227255IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6227254IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10229253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6229254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4233252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028374402IPR000571Zinc finger, CCCH-type
SMARTSM003560.053374401IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4376401IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-5378404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821420448IPR000571Zinc finger, CCCH-type
SMARTSM003560.013420447IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5421448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4424446IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7426446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEKSVEISDP NSSRPDPEST SRSISDEAMI DRGSSDVNHD AEELSDQLKN VGLEETSFRD  60
LGGDDEKERA REEEVGDESE SMMEKRVAVY PLRPEAEDCS FYMRTGTCKY GSTCKFNHPV  120
KRRLQVISSF TNICMFYYFN FPSYDNDFES FWLSIWRKFD LTISGLIGRD RVREREEDVE  180
NPKLMECKFY FRTGGCKYGD SCRFSHTKQK NSLTSGPELN FLGLPIRPGE KECPFYMRNG  240
SCKFGADCKF NHPDPTTIGG TDSPLLRGNG GSVGSFSPKA ASQASSTSWS SSRHMNGTGT  300
GTGTAPFIPV MFSQNRGVSP QTPEWNGYQA ASMYPPERSV LPPSTYMMNN SSAETSLISQ  360
QHQQQIPAEE FPERPDQPEC SYYLKTGDCK FKYKCKYHHP KNRLPKQAPS ALNDKGLPLR  420
PDQSMCSHYS RYGICKFGPA CRFDHSIPPP CLPSSSQTME APQVGNNGNE SDNWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394295.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLV4MJP00.0V4MJP0_EUTSA; Uncharacterized protein
STRINGXP_006394295.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.20.0C3H family protein