PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA49G00025

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

SRS

Protein Properties

Length: 90aa MW: 9924.26 Da PI: 9.1594

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA49G00025	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	75.9	1.1e-23	1	55	22	68
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........a 68 +RCRtCCksrgf C+ hvkstW paakrrerq+qlaa++s+ s+ + AA49G00025 1 MRCRTCCKSRGFLCQIHVKSTWFPAAKRRERQAQLAALQSRGGVSNtakrlregS 55 7************************************999887766333333321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	5.8E-15	1	28	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	2.5E-20	1	56	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MRCRTCCKSR GFLCQIHVKS TWFPAAKRRE RQAQLAALQS RGGVSNTAKR LREGSEAEAE 60 ADDDKGEADD SLVLACNRLV NVNSSGMIPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA49G00025

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536380.1	1e-25	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	5e-24	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	1e-21	A0A178W9B5_ARATH; SRS5
STRING	XP_010536380.1	4e-25	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22621	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-22	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]