PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA47G00031
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 179aa    MW: 20541.4 Da    PI: 10.3606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA47G00031genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-3343100259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  AA47G00031  43 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSEDPTIVITTYEGQHCHQ 100
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3427101IPR003657WRKY domain
SuperFamilySSF1182901.28E-2834100IPR003657WRKY domain
PROSITE profilePS5081129.83837102IPR003657WRKY domain
SMARTSM007743.3E-3842101IPR003657WRKY domain
PfamPF031063.1E-2643100IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEMVLSSMGK KEKEKKKKKK KAEKRVRQPR FAFMTKSDVD NLEDGYRWRK YGQKAVKNSP  60
FPRSYYRCTN SRCTVKKRVE RSSEDPTIVI TTYEGQHCHQ TIGFPRGGIL TAHLPPPSPN  120
PYYYQRLIHQ QQLHQETTTP SPTLPPTPTS TSTHETSNPL AEEKGLLGDV VPLTTRNPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2632100775Probable WRKY transcription factor 4
2lex_A3e-2632100775Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11019KEKEKKKKKK
21420KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA47G00031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935292e-83AB493529.1 Arabidopsis thaliana At1g69310 mRNA for hypothetical protein, partial cds, clone: RAAt1g69310.
GenBankAY0718492e-83AY071849.1 Arabidopsis thaliana WRKY transcription factor 57 (WRKY57) mRNA, complete cds.
GenBankBT0260572e-83BT026057.1 Arabidopsis thaliana At1g69310 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470908.16e-85PREDICTED: probable WRKY transcription factor 57
RefseqXP_010470909.16e-85PREDICTED: probable WRKY transcription factor 57
RefseqXP_010470911.16e-85PREDICTED: probable WRKY transcription factor 57
RefseqXP_010470912.16e-85PREDICTED: probable WRKY transcription factor 57
RefseqXP_019093150.16e-85PREDICTED: probable WRKY transcription factor 57
RefseqXP_019093151.16e-85PREDICTED: probable WRKY transcription factor 57
SwissprotQ9C9837e-78WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A078HQM08e-79A0A078HQM0_BRANA; BnaC06g30480D protein
TrEMBLA0A0D3CZ758e-79A0A0D3CZ75_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FZP88e-79A0A3P6FZP8_BRAOL; Uncharacterized protein
STRINGXP_010470908.12e-84(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-67WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]