PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA46G00208

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 60aa MW: 6441.16 Da PI: 6.2206

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA46G00208	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	55	1.6e-17	2	41	21	59
-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YY+C+s gCp++k+ver+a+d +++++tYe++Hnh+ AA46G00208 2 NRGYYKCSSVrGCPARKHVERAADDSSMLIVTYESDHNHS 41 69****988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	18.234	1	43	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.1E-17	2	41	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-14	2	42	IPR003657	WRKY domain
Pfam	PF03106	1.1E-14	2	40	IPR003657	WRKY domain
SMART	SM00774	1.2E-8	3	42	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MNRGYYKCSS VRGCPARKHV ERAADDSSML IVTYESDHNH SLSAADLAGA AVADLILESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA46G00208

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002391	6e-56	AC002391.3 Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence.
GenBank	CP002685	6e-56	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429281.1	4e-33	PREDICTED: probable WRKY transcription factor 15
Refseq	XP_010472333.1	4e-33	PREDICTED: probable WRKY transcription factor 15
Refseq	XP_018477660.1	5e-33	PREDICTED: probable WRKY transcription factor 15
Swissprot	O22176	5e-34	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A178VVT3	1e-31	A0A178VVT3_ARATH; WRKY15
TrEMBL	R0HTZ8	1e-31	R0HTZ8_9BRAS; Uncharacterized protein
STRING	Cagra.6414s0003.1.p	2e-32	(Capsella grandiflora)
STRING	AT2G23320.1	2e-32	(Arabidopsis thaliana)
STRING	XP_006294625.1	2e-32	(Capsella rubella)
STRING	XP_010417085.1	2e-32	(Camelina sativa)
STRING	XP_010429281.1	2e-32	(Camelina sativa)
STRING	XP_010472333.1	2e-32	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	1e-22	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]