PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA46G00207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 218aa MW: 23350.2 Da PI: 10.1488 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33 | 1.2e-10 | 194 | 213 | 3 | 22 |
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D y+WrKYGqK++kgs++pr AA46G00207 194 DDYSWRKYGQKPIKGSPHPR 213 99*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.5E-16 | 144 | 190 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.7E-10 | 181 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.945 | 187 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-8 | 190 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-7 | 194 | 213 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAVELMTRNY ISAVGSDNFD LQEAAASGLK SIENFIGVMS REDFNSNQSS SSSAAATATA 60 TTRSNFAGFF SKSTTTSNAA VSIYATNVTV SIYATNDTVS IYAAKSRNSC NDVVSNFTEF 120 SSLSSVTTET APFSTQSLSV ISSKRKCNSE TLVAGKCASA SSGRCHCSKK RKLKQKRVIR 180 VPAISAKMSD VPPDDYSWRK YGQKPIKGSP HPRLVKSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00275 | DAP | Transfer from AT2G23320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA46G00207 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353321 | 2e-61 | AK353321.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429281.1 | 5e-74 | PREDICTED: probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 4e-72 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | F4ILJ1 | 2e-71 | F4ILJ1_ARATH; WRKY DNA-binding protein 15 | ||||
STRING | XP_010429281.1 | 2e-73 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.2 | 2e-74 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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